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Tag: tleap

Parameter for zinc centre proteins

Parametrization of metallo-proteins always been a challenging problem during the set-up of classical molecular dynamics simulation. This tutorial will describe … More

Acpype, Amber, ambertogromacs, coordination, enzyme, Gromacs, metal, protein, tleap, zinc

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  • From Docking to Dynamics
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  • Molecular Docking: Tutorial
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  • Softwares and Servers
  • Tips and Tricks

Start here

  • Are we in a Simulation: Revisited?
  • Computational Skills
  • Contact
  • Education
  • From Docking to Dynamics
  • GNUPLOT Tricks
  • Homology Modelling
  • Jupyter Notebooks
  • Metadynamics on Fly
  • Molecular Docking: Tutorial
  • Professional Membership
  • Publications
  • Publications in progress
  • Research Interests
  • Simulation with Amber
  • Softwares and Servers
  • Tips and Tricks
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